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ypnP [2018-06-19 09:34:02]
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ypnP [2018-06-19 09:34:02]

putative damage inducible, Na+ driven multidrug efflux pump
locus
BSU21710
pI
10.05
mw
48.31 kDa
protein length
445 aa Sequence Blast
gene length
1335 bp Sequence Blast
function
unknown
product
putative damage inducible, Na+ driven multidrug efflux pump
essential
no
synonyms
dinF
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.15|Multidrug exporters/ based on homology]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.14|Resistance against toxins/ antibiotics/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    2,288,669 → 2,290,006

    The protein

    Protein family

  • [SW|MOP exporter family]

    • Structure

  • [PDB|4MLB] (from Pyrococcus furiosus, 23% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|CA85B14720E86D2E609388D561B56ADA880B2190|ypnP]
    description
    (according to [http://dbtbs.hgc.jp/COG/prom/ypnP.html DBTBS]) null
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    Biological materials

    Mutant

  • MGNA-A890 (ypnP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/890 NBRP B. subtilis, Japan]
  • BKE21710 (Δ[gene|CA85B14720E86D2E609388D561B56ADA880B2190|ypnP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE21710 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTTTCTCCTTGTGTTC, downstream forward: _UP4_TAAGTGAAGCACTGCGAAAA
  • BKK21710 (Δ[gene|CA85B14720E86D2E609388D561B56ADA880B2190|ypnP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK21710 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTTTCTCCTTGTGTTC, downstream forward: _UP4_TAAGTGAAGCACTGCGAAAA